PMC BioC JSON — Admin

PMC BioC JSON

pmc_bioc · email_key · json · 3.0/s

Credential Status

NCBI_API_KEY ✗ missing — add to .env file

NCBI_EMAIL ✗ missing

ACTIVE. Primary full-text source. Pre-labeled sections (TITLE, ABSTRACT, METHODS, CONCL). Phase 0 — already wired into ingest pipeline.

Field Mappings

7 rules

Source Field Path	→ Target Field	Transform	Req	Notes
`documents[0].passages[type=TITLE].text`	`papers.title`	—	●	First TITLE passage
`documents[0].infons.article-id_doi`	`papers.doi`	—	—	DOI from document infons
`documents[0].infons.journal`	`papers.journal`	—	—	Journal name
`documents[0].infons.year`	`papers.pub_year`	int	—	Publication year (cast to int)
`documents[0].passages[type=ABSTRACT].text`	`papers.abstract_text`	concat	—	All ABSTRACT passages joined
`documents[0].passages[type=METHODS].text`	`papers.methods_text`	concat	—	METHODS / METHOD passages joined
`documents[0].passages[type=CONCL].text`	`papers.conclusions_text`	concat	—	CONCL / DISCUSS / CONCLUSIONS passages joined

Add Field Mapping

Source Field Path * (JSONPath or XPath)

Target Field *

Transform

Default Value

Required

Notes

Edit Source

Name

Base URL

Auth Type

Status

API Key Env Var

Email Env Var

Notes

Journals (0)

No journals registered for this source. Add journals →